Senior Machine Learning Engineer, BenchSci
Knowledge Graph
More information about location
AI for biomedical research
Job no longer available
AI for biomedical research
201-500 employees
Job no longer available
More information about location
201-500 employees
Company mission
To exponentially increase the speed and quality of life-saving research by empowering scientists with the world's most advanced biomedical artificial intelligence.
Role
Who you are
- You are comfortable working in a team that pushes the boundaries of what is possible with cutting edge ML/AI, challenges the status quo, is laser focused on value delivery in a fail-fast environment
- Minimum 3, ideally 5+ years of experience working as an ML engineer
- Some experience providing technical leadership on complex projects
- Degree, preferably PhD, in Software Engineering, Computer Science, or a similar area.A proven track record of delivering complex ML projects working alongside high performing ML, data and software engineers using agile software development. Demonstrable ML proficiency with a deep understanding of how to utilise state of the art NLP and ML techniques
- Mastery of several ML frameworks and libraries, with the ability to architect complex ML systems from scratch. Extensive experience with Python and PyTorch
- Track record of contributing to the successful delivery of robust, scalable and production-ready ML models, with a focus on optimising performance and efficiency
- Experience with the full ML development lifecycle from architecture and technical design, through data collection and preparation, model selection, training, fine-tuning and evaluation, to deployment and maintenance
- Familiarity with implementing solutions leveraging Large Language Models, as well as a deep understanding of how to implement solutions using Retrieval Augmented Generation (RAG) architecture
- Experience with graph machine learning (i.e. graph neural networks, graph data science) and practical applications thereof. This is complimented by your experience working with Knowledge Graphs, ideally biological, and a familiarity with biological ontologies
- Experience with complex problem solving and an eye for details such as scalability and performance of a potential solution
- Comprehensive knowledge of software engineering, programming fundamentals and industry experience using Python
- Experience with data manipulation and processing, such as SQL, Cypher or Pandas.A can-do proactive and assertive attitude - your manager believes in freedom and responsibility and helping you own what you do; you will excel best if this environment suits you
- You have experience working in cross-functional teams with product managers, scientists, project managers, engineers from other disciplines (e.g. data engineering).Ideally you have worked in the scientific/biological domain with scientists on your team
- Outstanding verbal and written communication skills. Can clearly explain complex technical concepts/systems to engineering peers and non-engineering stakeholders
- A growth mindset continuously seeking to stay up-to-date with cutting-edge advances in ML/AI, complimented by actively engaging with the ML/AI community
What the job involves
- We are looking for a Senior Machine Learning Engineer to join our Knowledge Enrichment team at BenchSci
- You will help design and implement ML-based approaches to analyse, extract and generate knowledge from complex biomedical data such as experimental protocols and from results from several heterogeneous sources, including both publicly available data and proprietary internal data, represented in unstructured text and knowledge graphs
- You will work alongside some of the brightest minds in tech, leveraging state of the art approaches to deliver on BenSci’s mission to expedite drug discovery. Knowledge Enrichment is at the core of this challenge as it ensures we can reason over and gain insights from an extensive, accurate, and high quality representation of biomedical data
- The data will be leveraged in order to enrich BenchSci’s knowledge graph through classification, discovery of high value implicit relationships, predicting novel insights/hypotheses, and other ML techniques. You will collaborate with your team members in applying state of the art ML and graph ML/data science algorithms to this data
- Analyse and manipulate a large, highly-connected biological knowledge graph constructed of data from multiple heterogeneous sources, in order to identify data enrichment opportunities and strategies
- Work with data and knowledge engineering experts to design and develop knowledge enrichment approaches/strategies that can exploit data within our knowledge graph
- Provide solutions related to classification, clustering, more-like-this-type querying, discovery of high value implicit relationships, and making inferences across the data that can reveal novel insights
- Deliver robust, scalable and production-ready ML models, with a focus on optimising performance and efficiency
- Architect and design ML solutions, from data collection and preparation, model selection, training, fine-tuning and evaluation, to deployment and monitoring
- Collaborate with your teammates from other functions such as product management, project management and science, as well as other engineering disciplines
- Sometimes provide technical leadership on Knowledge Enrichment projects that seek to use ML to enrich the data in BenchSci’s Knowledge Graph
- Work closely with other ML engineers to ensure alignment on technical solutioning and approaches
- Liaise closely with stakeholders from other functions including product and science
- Help ensure adoption of ML best practices and state of the art ML approaches within your team(s).Participate in various agile rituals and related practices
Salary benchmarks
Our take
Over the past decade, the cost of bringing a drug to market has increased exponentially. But the number of drugs approved has stayed stagnant, leading to a decline in research productivity. Through development of AI-assisted software, BenchSci has allowed scientists to rapidly compute data from scientific journals and product catalogues to dramatically reduce these inefficiencies in the R&D process.
The company offers a lateral solution to traditional, manual data analysis to allow for data leveraging. Plus an automated, comprehensive overview of existing relevant research. These methods have made BenchSci a forerunner in the drug development industry; the company's software is used by leading pharmaceutical companies.
BenchSci continues to invest in its machine learning technology, and in 2023 launched ASCEND. This is software that extracts experimental evidence from internal and external sources to help improve the hit rate of drug trials. It has also raised considerable funds, the latest of which is supporting the expansion of the platform.
Steph
Company Specialist at Welcome to the Jungle
Insights
31% employee growth in 12 months
Company
Funding (last 2 of 7 rounds)
May 2023
$68.1m
SERIES D
Jan 2022
$45.2m
SERIES C
Total funding: $158.4m
Company benefits
- An engaging remote-first culture that hires the best talent from around the world
- Compensation package that includes BenchSci equity options
- Comprehensive health and dental benefits with an emphasis on mental health
- An annual Executive Health Assessment at Medcan for proactive health awareness
- Three weeks of vacation plus an additional day for every completed year
- A $2000 Annual Learning & Development budget
- Generous parental leave benefits with a top-up plan or paid time off options
- Additional time-off: 2 weeks for Winter Holiday, every other Friday in July and August, your birthday, and more!
- A $1000 work from home allowance to make your home setup perfect for you
- An Oculus Quest 2 to connect with your team members in Virtual Reality
- An executive coach for managers to assist in leading high-performing teams
- Complimentary Headspace account to support mental wellness and focus
- Complimentary genome sequencing from 23andMe to better understand your health through your DNA
Company HQ
South Core, Toronto, ON
Leadership
Dr. Elvis Wianda
(Co-Founder & Chief Data Officer)Obtained a PhD studying Health & Medical Physics at the University of Toronto before joining BenchSci.
Dr. Tom Leung
(Co-Founder & CSO)Previously held roles within the University of Toronto as a Research Assistant and Postdoctoral Fellow.
Liran Belenzon
(Co-Founder & CEO)Previously co-founded and held role as CEO at companies including Standy and Biz-Coupon. Currently a CDL Associate at Creative Destruction Lab.
Share this job
View 8 more jobs at BenchSci